"Every time Apple's commission has been challenged in court, there has been near universal agreement that Apple deserves to charge for access to its ecosystem. However, how much to charge and how to collect it has proven to be quite the debate."

Read More Japanese developers line up for free rides in the Apple App Store

This development places Brazil alongside the European Union, Japan, and South Korea as regions where Apple has been compelled to allow alternative app marketplaces and payment options due to regulatory pressure.

Read More Apple: Et tu Brazil?